Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.18" 2023-01-17; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -g mm10 -d /storage2/nyt/Projects/Juicer-Out/2023-02-28-BGI-dMcph_PICO_TomilinStarkovaRNA-seqHi-C/B2-6r1 -s DpnII -y /storage2/dreamworld/Databases/mm10_canonical/juicer.rs/mm10_canonical.rs.DpnII.txt -p /storage2/dreamworld/Databases/mm10_canonical/mm10_canonical.chrom.sizes -z /storage2/dreamworld/Databases/mm10_canonical/mm10_canonical.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10                                                                                                                                                                                                                                                                                                                                                                                                                                            
Sequenced Read Pairs:  97,903,974
 Normal Paired: 56,869,460 (58.09%)
 Chimeric Paired: 31,336,394 (32.01%)
 Chimeric Ambiguous: 9,101,970 (9.30%)
 Unmapped: 596,150 (0.61%)
 Ligation Motif Present: 86,547,006 (88.40%)
Alignable (Normal+Chimeric Paired): 88,205,854 (90.09%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-03-02T11:06:24,112]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 79,315,307 (81.01%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 8,890,547 (9.08%)
Library Complexity Estimate: 0
Intra-fragment Reads: 15,900,962 (16.24% / 20.05%)
Below MAPQ Threshold: 9,111,971 (9.31% / 11.49%)
Hi-C Contacts: 54,302,374 (55.46% / 68.46%)
 Ligation Motif Present: 48,588,153  (49.63% / 61.26%)
 3' Bias (Long Range): 72% - 28%
 Pair Type intra chrom %(L-I-O-R): 10% - 69% - 10% - 10%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 35%
 Cis/all (FF and RR orient): 37.9%
Inter-chromosomal: 21,954,555  (22.42% / 27.68%)
Intra-chromosomal: 32,347,819  (33.04% / 40.78%)
Short Range (<20,000bp): 19,908,863  (20.34% / 25.10%)
Long Range (>20,000bp): 12,438,956  (12.71% / 15.68%)