Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.18" 2023-01-17; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -g mm10 -d /storage2/nyt/Projects/Juicer-Out/2023-02-28-BGI-dMcph_PICO_TomilinStarkovaRNA-seqHi-C/B2-6r2 -s DpnII -y /storage2/dreamworld/Databases/mm10_canonical/juicer.rs/mm10_canonical.rs.DpnII.txt -p /storage2/dreamworld/Databases/mm10_canonical/mm10_canonical.chrom.sizes -z /storage2/dreamworld/Databases/mm10_canonical/mm10_canonical.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10                                                                                                                                                                                                                                                                                                                                                                                                                                            
Sequenced Read Pairs:  108,892,952
 Normal Paired: 66,315,023 (60.90%)
 Chimeric Paired: 32,676,966 (30.01%)
 Chimeric Ambiguous: 9,321,028 (8.56%)
 Unmapped: 579,935 (0.53%)
 Ligation Motif Present: 97,157,907 (89.22%)
Alignable (Normal+Chimeric Paired): 98,991,989 (90.91%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-03-02T22:17:46,799]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 87,910,631 (80.73%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 11,081,358 (10.18%)
Library Complexity Estimate: 0
Intra-fragment Reads: 18,657,185 (17.13% / 21.22%)
Below MAPQ Threshold: 9,957,060 (9.14% / 11.33%)
Hi-C Contacts: 59,296,386 (54.45% / 67.45%)
 Ligation Motif Present: 53,495,313  (49.13% / 60.85%)
 3' Bias (Long Range): 73% - 27%
 Pair Type intra chrom %(L-I-O-R): 10% - 71% - 10% - 10%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 37%
 Cis/all (FF and RR orient): 37.3%
Inter-chromosomal: 23,298,038  (21.40% / 26.50%)
Intra-chromosomal: 35,998,348  (33.06% / 40.95%)
Short Range (<20,000bp): 23,106,055  (21.22% / 26.28%)
Long Range (>20,000bp): 12,892,293  (11.84% / 14.67%)