Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "17.0.10" 2024-01-16; juicer.sh -g Trichoplax -d /storage3/artem/MGNC_apr24/TA5/ -s DpnII -p /storage3/artem/Genomes/Trichoplax/triadV2_030816_SP.sizes -y /storage3/artem/Genomes/Trichoplax/Trichoplax_DpnII.txt -z /storage3/artem/Genomes/Trichoplax/triadV2_030816_SP.fasta -t 10 -D /storage2/dreamworld/Tools/juicer1.6_compact/                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
Sequenced Read Pairs:  327,157
 Normal Paired: 188,836 (57.72%)
 Chimeric Paired: 95,742 (29.26%)
 Chimeric Ambiguous: 17,639 (5.39%)
 Unmapped: 24,940 (7.62%)
 Ligation Motif Present: 64,945 (19.85%)
Alignable (Normal+Chimeric Paired): 284,578 (86.99%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-04-27T17:10:14,476]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 281,274 (85.98%)
PCR Duplicates: 3,180 (0.97%)
Optical Duplicates: 124 (0.04%)
Library Complexity Estimate: 12,627,343
Intra-fragment Reads: 85,585 (26.16% / 30.43%)
Below MAPQ Threshold: 16,255 (4.97% / 5.78%)
Hi-C Contacts: 265,019 (81.01% / 94.22%)
 Ligation Motif Present: 50,231  (15.35% / 17.86%)
 3' Bias (Long Range): 56% - 44%
 Pair Type intra chrom %(L-I-O-R): 5% - 86% - 4% - 5%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 59%
 Cis/all (FF and RR orient): 35.7%
Inter-chromosomal: 69,416  (21.22% / 24.68%)
Intra-chromosomal: 195,603  (59.79% / 69.54%)
Short Range (<20,000bp): 169,718  (51.88% / 60.34%)
Long Range (>20,000bp): 25,885  (7.91% / 9.20%)