Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "17.0.11" 2024-04-16; juicer.sh -g Trichoplax -d /storage3/artem/Trichoplax/TA5/ -s DpnII -p /storage3/artem/Genomes/Trichoplax/triadV2_030816_SP.sizes -y /storage3/artem/Genomes/Trichoplax/Trichoplax_DpnII.txt -z /storage3/artem/Genomes/Trichoplax/triadV2_030816_SP.fasta -t 10 -D /storage2/dreamworld/Tools/juicer1.6_compact/                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
Sequenced Read Pairs:  32,354,642
 Normal Paired: 18,856,562 (58.28%)
 Chimeric Paired: 10,383,996 (32.09%)
 Chimeric Ambiguous: 1,883,115 (5.82%)
 Unmapped: 1,230,969 (3.80%)
 Ligation Motif Present: 6,672,051 (20.62%)
Alignable (Normal+Chimeric Paired): 29,240,558 (90.38%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-07-28T18:27:53,254]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 27,518,164 (85.05%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 1,722,394 (5.32%)
Library Complexity Estimate: 0
Intra-fragment Reads: 8,198,192 (25.34% / 29.79%)
Below MAPQ Threshold: 896,438 (2.77% / 3.26%)
Hi-C Contacts: 26,621,726 (82.28% / 96.74%)
 Ligation Motif Present: 5,235,529  (16.18% / 19.03%)
 3' Bias (Long Range): 56% - 44%
 Pair Type intra chrom %(L-I-O-R): 5% - 86% - 5% - 5%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 59%
 Cis/all (FF and RR orient): 33.2%
Inter-chromosomal: 7,371,837  (22.78% / 26.79%)
Intra-chromosomal: 19,249,889  (59.50% / 69.95%)
Short Range (<20,000bp): 16,579,372  (51.24% / 60.25%)
Long Range (>20,000bp): 2,670,517  (8.25% / 9.70%)