Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.11" 2021-04-20; /Data/UserData/FairWind/Ya.Cloud/core/pipeline/juicer/scripts/juicer.sh -t 10 -D /Data/UserData/FairWind/Ya.Cloud/core/pipeline/juicer -g mm10 -z /Data/DataBases/mm10/mm10_canonic.fa -p /Data/DataBases/mm10/mm10_canonic.chrom.sizes -s DpnII -y /Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_DpnII_mm10.txt -d /Data/NGS_Data/20211129_Maria_NGS_data_run143/Result/51                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
Sequenced Read Pairs:  93,918
 Normal Paired: 42,303 (45.04%)
 Chimeric Paired: 40,558 (43.18%)
 Chimeric Ambiguous: 9,774 (10.41%)
 Unmapped: 1,283 (1.37%)
 Ligation Motif Present: 63,282 (67.38%)
Alignable (Normal+Chimeric Paired): 82,861 (88.23%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2021-11-29T13:45:41,403]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 82,625 (87.98%)
PCR Duplicates: 121 (0.13%)
Optical Duplicates: 115 (0.12%)
Library Complexity Estimate: 28,265,388
Intra-fragment Reads: 5,411 (5.76% / 6.55%)
Below MAPQ Threshold: 15,877 (16.91% / 19.22%)
Hi-C Contacts: 61,337 (65.31% / 74.24%)
 Ligation Motif Present: 43,475  (46.29% / 52.62%)
 3' Bias (Long Range): 73% - 27%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 8,632  (9.19% / 10.45%)
Intra-chromosomal: 52,705  (56.12% / 63.79%)
Short Range (<20Kb): 28,129  (29.95% / 34.04%)
Long Range (>20Kb): 24,576  (26.17% / 29.74%)