Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.15" 2022-04-19; /Data/Tools/juicer1.6_compact/scripts/juicer.sh -t 10 -D /Data/Tools/juicer1.6_compact -g Cnem1_top100 -z /Data/Tools/exoclasma/databases/Cnem1_top100/Cnem1_top100.fasta -p /Data/Tools/exoclasma/databases/Cnem1_top100/Cnem1_top100.chromsizes.txt -s DpnII -y /Data/Tools/exoclasma/databases/Cnem1_top100/Cnem1_top100.restriction_sites.DpnII.txt -d /Data/NGS_Data/2022-07-25-BGI/SN2                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
Sequenced Read Pairs:  1,119,258
 Normal Paired: 300,942 (26.89%)
 Chimeric Paired: 18,471 (1.65%)
 Chimeric Ambiguous: 81,119 (7.25%)
 Unmapped: 718,726 (64.21%)
 Ligation Motif Present: 713,158 (63.72%)
Alignable (Normal+Chimeric Paired): 319,413 (28.54%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2022-08-10T14:15:25,743]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 302,769 (27.05%)
PCR Duplicates: 16,644 (1.49%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 2,957,485
Intra-fragment Reads: 55,317 (4.94% / 18.27%)
Below MAPQ Threshold: 206,415 (18.44% / 68.18%)
Hi-C Contacts: 41,037 (3.67% / 13.55%)
 Ligation Motif Present: 25,329  (2.26% / 8.37%)
 3' Bias (Long Range): 53% - 47%
 Pair Type intra chrom %(L-I-O-R): 3% - 90% - 4% - 3%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 26% - 24%
 DE: 15%
 Cis/all (FF and RR orient): 2.1%
Inter-chromosomal: 34,230  (3.06% / 11.31%)
Intra-chromosomal: 6,807  (0.61% / 2.25%)
Short Range (<1bp): 0  (0.00% / 0.00%)
Long Range (>1bp): 6,807  (0.61% / 2.25%)