Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.15" 2022-04-19; /Data/Tools/juicer1.6_compact/scripts/juicer.sh -t 10 -D /Data/Tools/juicer1.6_compact -g Cnem1_top100 -z /Data/Tools/exoclasma/databases/Cnem1_top100/Cnem1_top100.fasta -p /Data/Tools/exoclasma/databases/Cnem1_top100/Cnem1_top100.chromsizes.txt -s DpnII -y /Data/Tools/exoclasma/databases/Cnem1_top100/Cnem1_top100.restriction_sites.DpnII.txt -d /Data/NGS_Data/2022-07-25-BGI/SN4                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
Sequenced Read Pairs:  1,085,601
 Normal Paired: 293,084 (27.00%)
 Chimeric Paired: 17,811 (1.64%)
 Chimeric Ambiguous: 78,520 (7.23%)
 Unmapped: 696,186 (64.13%)
 Ligation Motif Present: 650,859 (59.95%)
Alignable (Normal+Chimeric Paired): 310,895 (28.64%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2022-08-10T14:33:02,540]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 293,733 (27.06%)
PCR Duplicates: 17,162 (1.58%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 2,711,365
Intra-fragment Reads: 51,704 (4.76% / 17.60%)
Below MAPQ Threshold: 201,751 (18.58% / 68.69%)
Hi-C Contacts: 40,278 (3.71% / 13.71%)
 Ligation Motif Present: 23,331  (2.15% / 7.94%)
 3' Bias (Long Range): 53% - 47%
 Pair Type intra chrom %(L-I-O-R): 3% - 90% - 4% - 3%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 26% - 24%
 DE: 14%
 Cis/all (FF and RR orient): 2.1%
Inter-chromosomal: 33,866  (3.12% / 11.53%)
Intra-chromosomal: 6,412  (0.59% / 2.18%)
Short Range (<1bp): 0  (0.00% / 0.00%)
Long Range (>1bp): 6,412  (0.59% / 2.18%)