Experiment description: Juicer version 1.5.6;4 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 4 -d /mnt/storage/home/manuriddinov/scratch/fastq/ulitka -p /mnt/storage/home/manuriddinov/MyData/Mollusca/genome/joinscf/ulitka_dip/ulitka_dip.chrom.sizes -y /mnt/storage/home/manuriddinov/MyData/Mollusca/genome/joinscf/ulitka_dip/ulitka_dip.MboI.juicer.txt -q -1 -n ulitka_dip -l 1000000,500000,250000,100000,50000,25000,10000,5000,1000 -z /mnt/storage/home/manuriddinov/MyData/Mollusca/genome/joinscf/ulitka_dip/ulitka_dip.fa -o /mnt/storage/home/manuriddinov/scratch/Invertebrates/ulitka_dip -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                            
Sequenced Read Pairs:  49,269,687
 Normal Paired: 25,721,739 (52.21%)
 Chimeric Paired: 6,646,333 (13.49%)
 Chimeric Ambiguous: 14,159,081 (28.74%)
 Unmapped: 2,742,534 (5.57%)
 Ligation Motif Present: 30,041,680 (60.97%)
Alignable (Normal+Chimeric Paired): 32,368,072 (65.70%)
Unique Reads: 32,002,469 (64.95%)
PCR Duplicates: 365,603 (0.74%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 1,422,017,735
Intra-fragment Reads: 3,545,549 (7.20% / 11.08%)
Below MAPQ Threshold: 19,303,122 (39.18% / 60.32%)
Hi-C Contacts: 9,153,798 (18.58% / 28.60%)
 Ligation Motif Present: 5,033,873  (10.22% / 15.73%)
 3' Bias (Long Range): 71% - 29%
 Pair Type intra chrom %(L-I-O-R): 6% - 81% - 6% - 6%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 58%
 Cis/all (FF and RR orient): 47.5%
Inter-chromosomal: 2,035,078  (4.13% / 6.36%)
Intra-chromosomal: 7,118,720  (14.45% / 22.24%)
Short Range (<20,000bp): 5,839,941  (11.85% / 18.25%)
Long Range (>20,000bp): 1,278,779  (2.60% / 4.00%)