Experiment description: Juicer version 1.5.6;4 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 4 -d /mnt/storage/home/manuriddinov/scratch/fastq/ulitka -p /mnt/storage/home/manuriddinov/MyData/Mollusca/genome/joinscf/ulitka_purged/ulitka_purged.chrom.sizes -y /mnt/storage/home/manuriddinov/MyData/Mollusca/genome/joinscf/ulitka_purged/ulitka_purged.MboI.juicer.txt -q -1 -n ulitka_purged -l 1000000,500000,250000,100000,50000,25000,10000,5000,1000 -z /mnt/storage/home/manuriddinov/MyData/Mollusca/genome/joinscf/ulitka_purged/ulitka_purged.fa -o /mnt/storage/home/manuriddinov/scratch/Invertebrates/ulitka_purged -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                    
Sequenced Read Pairs:  49,269,687
 Normal Paired: 25,984,322 (52.74%)
 Chimeric Paired: 7,753,446 (15.74%)
 Chimeric Ambiguous: 14,063,966 (28.54%)
 Unmapped: 1,467,953 (2.98%)
 Ligation Motif Present: 30,041,680 (60.97%)
Alignable (Normal+Chimeric Paired): 33,737,768 (68.48%)
Unique Reads: 33,315,477 (67.62%)
PCR Duplicates: 422,291 (0.86%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 1,336,423,151
Intra-fragment Reads: 3,998,024 (8.11% / 12.00%)
Below MAPQ Threshold: 18,827,591 (38.21% / 56.51%)
Hi-C Contacts: 10,489,862 (21.29% / 31.49%)
 Ligation Motif Present: 5,697,544  (11.56% / 17.10%)
 3' Bias (Long Range): 71% - 29%
 Pair Type intra chrom %(L-I-O-R): 5% - 85% - 5% - 5%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 56%
 Cis/all (FF and RR orient): 32.8%
Inter-chromosomal: 3,112,098  (6.32% / 9.34%)
Intra-chromosomal: 7,377,764  (14.97% / 22.15%)
Short Range (<20,000bp): 6,515,676  (13.22% / 19.56%)
Long Range (>20,000bp): 862,088  (1.75% / 2.59%)