Experiment description: Juicer version 1.5.6;4 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 4 -d /mnt/storage/home/manuriddinov/scratch/fastq/ulitka -p /mnt/storage/home/manuriddinov/MyData/Mollusca/genome/joinscf/ulitka_purged/ulitka_purged.chrom.sizes -y /mnt/storage/home/manuriddinov/MyData/Mollusca/genome/joinscf/ulitka_purged/ulitka_purged.MboI.juicer.txt -q -1 -n ulitka_purged -l 1000000,500000,250000,100000,50000,25000,10000,5000,1000 -z /mnt/storage/home/manuriddinov/MyData/Mollusca/genome/joinscf/ulitka_purged/ulitka_purged.fa -o /mnt/storage/home/manuriddinov/scratch/Invertebrates/ulitka_purged -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                    
Sequenced Read Pairs:  49,269,687
 Normal Paired: 25,984,322 (52.74%)
 Chimeric Paired: 7,753,446 (15.74%)
 Chimeric Ambiguous: 14,063,966 (28.54%)
 Unmapped: 1,467,953 (2.98%)
 Ligation Motif Present: 30,041,680 (60.97%)
Alignable (Normal+Chimeric Paired): 33,737,768 (68.48%)
Unique Reads: 33,315,477 (67.62%)
PCR Duplicates: 422,291 (0.86%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 1,336,423,151
Intra-fragment Reads: 3,998,024 (8.11% / 12.00%)
Below MAPQ Threshold: 0 (0.00% / 0.00%)
Hi-C Contacts: 29,317,453 (59.50% / 88.00%)
 Ligation Motif Present: 13,963,094  (28.34% / 41.91%)
 3' Bias (Long Range): 65% - 35%
 Pair Type intra chrom %(L-I-O-R): 11% - 66% - 12% - 12%
 Pair Type inter chrom %(L-I-O-R): 26% - 24% - 24% - 26%
 DE: 23%
 Cis/all (FF and RR orient): 23.8%
Inter-chromosomal: 16,898,627  (34.30% / 50.72%)
Intra-chromosomal: 12,418,826  (25.21% / 37.28%)
Short Range (<20,000bp): 8,041,419  (16.32% / 24.14%)
Long Range (>20,000bp): 4,377,407  (8.88% / 13.14%)