Experiment description: Juicer version 1.5.6;4 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 4 -d /mnt/storage/home/manuriddinov/scratch/fastq/ulitka -p /mnt/storage/home/manuriddinov/MyData/Mollusca/genome/scf/ulitka/ulitka.dip.scf.sizes -y /mnt/storage/home/manuriddinov/MyData/Mollusca/genome/scf/ulitka/ulitka.dip.MboI.juicer.txt -q 30 -n ulitka.dip -l 1000000,500000,250000,100000,50000,25000,10000,5000,1000 -z /mnt/storage/home/manuriddinov/MyData/Mollusca/genome/scf/ulitka/ulitka.dip.fa -o /mnt/storage/home/manuriddinov/scratch/Invertebrates/ulitka -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                          
Sequenced Read Pairs:  49,269,687
 Normal Paired: 25,721,962 (52.21%)
 Chimeric Paired: 6,847,945 (13.90%)
 Chimeric Ambiguous: 13,952,973 (28.32%)
 Unmapped: 2,746,807 (5.58%)
 Ligation Motif Present: 30,041,680 (60.97%)
Alignable (Normal+Chimeric Paired): 32,569,907 (66.11%)
Unique Reads: 32,203,463 (65.36%)
PCR Duplicates: 366,444 (0.74%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 1,436,545,739
Intra-fragment Reads: 3,544,666 (7.19% / 11.01%)
Below MAPQ Threshold: 19,488,212 (39.55% / 60.52%)
Hi-C Contacts: 9,170,585 (18.61% / 28.48%)
 Ligation Motif Present: 5,045,980  (10.24% / 15.67%)
 3' Bias (Long Range): 71% - 29%
 Pair Type intra chrom %(L-I-O-R): 3% - 91% - 3% - 3%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 58%
 Cis/all (FF and RR orient): 18.9%
Inter-chromosomal: 3,158,204  (6.41% / 9.81%)
Intra-chromosomal: 6,012,381  (12.20% / 18.67%)
Short Range (<1bp): 0  (0.00% / 0.00%)
Long Range (>1bp): 6,012,381  (12.20% / 18.67%)