Experiment description: Juicer version 1.6; BWA 0.7.19-r1273; 78 threads; openjdk version "21.0.6" 2025-01-21; /home/konstantinovvv/juicer-1.6/CPU/juicer.sh -D /home/konstantinovvv/juicer-1.6/CPU -d /scratch/konstantinovvv-xenopus_30d_260121/TK_L1 -s DpnII -z /home/konstantinovvv/genomes/xenopus_tropicalis/xenopus_tropicalis.fa -p /home/konstantinovvv/genomes/xenopus_tropicalis/xenopus_tropicalis.chromsizes -y /scratch/konstantinovvv-xenopus_30d_260121/xenopus_tropicalis_DpnII.txt -t 78                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  12,244,047
 Normal Paired: 10,019,932 (81.84%)
 Chimeric Paired: 883,544 (7.22%)
 Chimeric Ambiguous: 782,344 (6.39%)
 Unmapped: 558,227 (4.56%)
 Ligation Motif Present: 1,719,000 (14.04%)
Alignable (Normal+Chimeric Paired): 10,903,476 (89.05%)
Unique Reads: 3,501,668 (28.60%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 7,401,808 (60.45%)
Library Complexity Estimate: 0
Intra-fragment Reads: 707,159 (5.78% / 20.19%)
Below MAPQ Threshold: 1,617,226 (13.21% / 46.18%)
Hi-C Contacts: 1,177,283 (9.62% / 33.62%)
 Ligation Motif Present: 225,930  (1.85% / 6.45%)
 3' Bias (Long Range): 44% - 56%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 3,030  (0.02% / 0.09%)
Intra-chromosomal: 1,174,253  (9.59% / 33.53%)
Short Range (<20Kb): 992,996  (8.11% / 28.36%)
Long Range (>20Kb): 181,248  (1.48% / 5.18%)