Experiment description: Juicer version 1.6; BWA 0.7.19-r1273; 78 threads; openjdk version "21.0.6" 2025-01-21; /home/konstantinovvv/juicer-1.6/CPU/juicer.sh -D /home/konstantinovvv/juicer-1.6/CPU -d /scratch/konstantinovvv-xenopus_30d_260121/TM_I_L1 -s DpnII -z /home/konstantinovvv/genomes/xenopus_tropicalis/xenopus_tropicalis.fa -p /home/konstantinovvv/genomes/xenopus_tropicalis/xenopus_tropicalis.chromsizes -y /scratch/konstantinovvv-xenopus_30d_260121/xenopus_tropicalis_DpnII.txt -t 78                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
Sequenced Read Pairs:  22,027,001
 Normal Paired: 16,714,740 (75.88%)
 Chimeric Paired: 1,727,944 (7.84%)
 Chimeric Ambiguous: 3,118,715 (14.16%)
 Unmapped: 465,602 (2.11%)
 Ligation Motif Present: 3,988,604 (18.11%)
Alignable (Normal+Chimeric Paired): 18,442,684 (83.73%)
Unique Reads: 4,655,137 (21.13%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 13,787,547 (62.59%)
Library Complexity Estimate: 0
Intra-fragment Reads: 876,060 (3.98% / 18.82%)
Below MAPQ Threshold: 2,447,923 (11.11% / 52.59%)
Hi-C Contacts: 1,331,154 (6.04% / 28.60%)
 Ligation Motif Present: 385,954  (1.75% / 8.29%)
 3' Bias (Long Range): 53% - 47%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 11,324  (0.05% / 0.24%)
Intra-chromosomal: 1,319,830  (5.99% / 28.35%)
Short Range (<20Kb): 945,752  (4.29% / 20.32%)
Long Range (>20Kb): 374,067  (1.70% / 8.04%)