Experiment description: ${about}; Juicer version 1.5.6; BWA 0.7.17-r1188; 24 threads; java version "1.8.0_45"; /mnt/storage/home/talagunov/soft/juicer_mir/CPU/juicer.sh -n TK -g xenopus_tropicalis -D /mnt/storage/home/talagunov/soft/juicer_mir/CPU/ -t 24 -z /mnt/storage/home/talagunov/genomes/references/xenopus_tropicalis/xenopus_tropicalis.fa -a TK xenopus_tropicalis -p /mnt/storage/home/talagunov/genomes/references/xenopus_tropicalis/xenopus_tropicalis.chromsizes -d /mnt/scratch/ws/talagunov/202512050936talagunov21/xenopus_hic/TK -s DpnII -y /mnt/storage/home/talagunov/genomes/restriction_sites/xenopus_tropicalis_DpnII.txt                                                                                                                                                                                                                                                                                                                                                                                
Sequenced Read Pairs:  361,080
 Normal Paired: 296,026 (81.98%)
 Chimeric Paired: 24,848 (6.88%)
 Chimeric Ambiguous: 22,512 (6.23%)
 Unmapped: 17,694 (4.90%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 320,874 (88.87%)
Unique Reads: 224,106 (62.07%)
PCR Duplicates: 42,245 (11.70%)
Optical Duplicates: 54,523 (15.10%)
Library Complexity Estimate: 748,306
Intra-fragment Reads: 58,168 (16.11% / 25.96%)
Below MAPQ Threshold: 78,639 (21.78% / 35.09%)
Hi-C Contacts: 87,299 (24.18% / 38.95%)
 Ligation Motif Present: 13,162  (3.65% / 5.87%)
 3' Bias (Long Range): 65% - 35%
 Pair Type intra chrom %(L-I-O-R): 6% - 83% - 5% - 6%
 Pair Type inter chrom %(L-I-O-R): 27% - 22% - 28% - 22%
 DE: 76%
 Cis/all (FF and RR orient): 99.3%
Inter-chromosomal: 139  (0.04% / 0.06%)
Intra-chromosomal: 87,160  (24.14% / 38.89%)
Short Range (<20,000bp): 76,302  (21.13% / 34.05%)
Long Range (>20,000bp): 10,858  (3.01% / 4.85%)