Experiment description: ${about}; Juicer version 1.5.6; BWA 0.7.17-r1188; 24 threads; java version "1.8.0_45"; /mnt/storage/home/talagunov/soft/juicer_mir/CPU/juicer.sh -n TM_I -g xenopus_tropicalis -D /mnt/storage/home/talagunov/soft/juicer_mir/CPU/ -t 24 -z /mnt/storage/home/talagunov/genomes/references/xenopus_tropicalis/xenopus_tropicalis.fa -a TM_I xenopus_tropicalis -p /mnt/storage/home/talagunov/genomes/references/xenopus_tropicalis/xenopus_tropicalis.chromsizes -d /mnt/scratch/ws/talagunov/202512050936talagunov21/xenopus_hic/TM_I -s DpnII -y /mnt/storage/home/talagunov/genomes/restriction_sites/xenopus_tropicalis_DpnII.txt                                                                                                                                                                                                                                                                                                                                                                          
Sequenced Read Pairs:  727,266
 Normal Paired: 556,340 (76.50%)
 Chimeric Paired: 53,981 (7.42%)
 Chimeric Ambiguous: 100,678 (13.84%)
 Unmapped: 16,267 (2.24%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 610,321 (83.92%)
Unique Reads: 291,204 (40.04%)
PCR Duplicates: 134,021 (18.43%)
Optical Duplicates: 185,096 (25.45%)
Library Complexity Estimate: 523,798
Intra-fragment Reads: 65,011 (8.94% / 22.32%)
Below MAPQ Threshold: 136,736 (18.80% / 46.96%)
Hi-C Contacts: 89,457 (12.30% / 30.72%)
 Ligation Motif Present: 20,777  (2.86% / 7.13%)
 3' Bias (Long Range): 64% - 36%
 Pair Type intra chrom %(L-I-O-R): 11% - 68% - 10% - 11%
 Pair Type inter chrom %(L-I-O-R): 24% - 25% - 25% - 26%
 DE: 56%
 Cis/all (FF and RR orient): 98.3%
Inter-chromosomal: 655  (0.09% / 0.22%)
Intra-chromosomal: 88,802  (12.21% / 30.49%)
Short Range (<20,000bp): 67,233  (9.24% / 23.09%)
Long Range (>20,000bp): 21,569  (2.97% / 7.41%)