Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.17" 2022-10-18; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -d /storage2/nyt/Projects/Juicer-Out/2022-11-07_BGI_Moscow/MoPh/MoPh11 -s DpnII -y /storage2/nyt/Data/Genomes/MoPh/cat_hg19_canonical.rs.DpnII_AsteI2_V4.MboI.juicer.txt -p /storage2/nyt/Data/Genomes/MoPh/cat_hg19_canonical_AsteI2_V4.chrom.sizes -z /storage2/nyt/Data/Genomes/MoPh/cat_hg19_canonical_AsteI2_V4.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
Sequenced Read Pairs:  29,577,994
 Normal Paired: 20,596,848 (69.64%)
 Chimeric Paired: 6,476,835 (21.90%)
 Chimeric Ambiguous: 2,224,540 (7.52%)
 Unmapped: 279,771 (0.95%)
 Ligation Motif Present: 19,436,952 (65.71%)
Alignable (Normal+Chimeric Paired): 27,073,683 (91.53%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2022-11-22T19:15:00,777]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 26,243,424 (88.73%)
PCR Duplicates: 830,259 (2.81%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 432,347,613
Intra-fragment Reads: 7,728,349 (26.13% / 29.45%)
Below MAPQ Threshold: 2,691,783 (9.10% / 10.26%)
Hi-C Contacts: 15,823,292 (53.50% / 60.29%)
 Ligation Motif Present: 10,793,335  (36.49% / 41.13%)
 3' Bias (Long Range): 66% - 34%
 Pair Type intra chrom %(L-I-O-R): 16% - 52% - 16% - 16%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 26%
 Cis/all (FF and RR orient): 65.0%
Inter-chromosomal: 4,069,330  (13.76% / 15.51%)
Intra-chromosomal: 11,753,962  (39.74% / 44.79%)
Short Range (<20,000bp): 6,016,300  (20.34% / 22.92%)
Long Range (>20,000bp): 5,737,662  (19.40% / 21.86%)