Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.17" 2022-10-18; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -d /storage2/nyt/Projects/Juicer-Out/2022-11-07_BGI_Moscow/MoPh/MoPh11 -s DpnII -y /storage2/nyt/Data/Genomes/MoPh/cat_hg19_canonical.rs.DpnII_AsteI2_V4.MboI.juicer.txt -p /storage2/nyt/Data/Genomes/MoPh/cat_hg19_canonical_AsteI2_V4.chrom.sizes -z /storage2/nyt/Data/Genomes/MoPh/cat_hg19_canonical_AsteI2_V4.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
Sequenced Read Pairs:  29,577,994
 Normal Paired: 20,596,848 (69.64%)
 Chimeric Paired: 6,476,835 (21.90%)
 Chimeric Ambiguous: 2,224,540 (7.52%)
 Unmapped: 279,771 (0.95%)
 Ligation Motif Present: 19,436,952 (65.71%)
Alignable (Normal+Chimeric Paired): 27,073,683 (91.53%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2022-11-22T19:15:00,777]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 26,243,424 (88.73%)
PCR Duplicates: 830,259 (2.81%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 432,347,613
Intra-fragment Reads: 7,728,349 (26.13% / 29.45%)
Below MAPQ Threshold: 4,124,629 (13.94% / 15.72%)
Hi-C Contacts: 14,390,446 (48.65% / 54.83%)
 Ligation Motif Present: 9,756,160  (32.98% / 37.18%)
 3' Bias (Long Range): 67% - 33%
 Pair Type intra chrom %(L-I-O-R): 16% - 53% - 15% - 16%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 29%
 Cis/all (FF and RR orient): 66.6%
Inter-chromosomal: 3,436,482  (11.62% / 13.09%)
Intra-chromosomal: 10,953,964  (37.03% / 41.74%)
Short Range (<20,000bp): 5,779,979  (19.54% / 22.02%)
Long Range (>20,000bp): 5,173,985  (17.49% / 19.72%)