Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.18" 2023-01-17; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -d /storage2/nyt/Projects/Juicer-Out/2023-03-14_Moscow/MoPh/MoPh11 -s DpnII -y /storage/nyt/Data/Genomes/MoPh/cat_hg19_canonical.rs.DpnII_AsteI2_V4.MboI.juicer.txt -p /storage/nyt/Data/Genomes/MoPh/cat_hg19_canonical_AsteI2_V4.chrom.sizes -z /storage/nyt/Data/Genomes/MoPh/cat_hg19_canonical_AsteI2_V4.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
Sequenced Read Pairs:  888,481
 Normal Paired: 429,756 (48.37%)
 Chimeric Paired: 217,001 (24.42%)
 Chimeric Ambiguous: 120,899 (13.61%)
 Unmapped: 120,825 (13.60%)
 Ligation Motif Present: 635,760 (71.56%)
Alignable (Normal+Chimeric Paired): 646,757 (72.79%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-03-20T22:34:29,460]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 567,309 (63.85%)
PCR Duplicates: 79,396 (8.94%)
Optical Duplicates: 52 (0.01%)
Library Complexity Estimate: 2,413,512
Intra-fragment Reads: 153,714 (17.30% / 27.10%)
Below MAPQ Threshold: 78,786 (8.87% / 13.89%)
Hi-C Contacts: 334,809 (37.68% / 59.02%)
 Ligation Motif Present: 254,984  (28.70% / 44.95%)
 3' Bias (Long Range): 59% - 41%
 Pair Type intra chrom %(L-I-O-R): 17% - 50% - 17% - 17%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 19%
 Cis/all (FF and RR orient): 48.6%
Inter-chromosomal: 138,749  (15.62% / 24.46%)
Intra-chromosomal: 196,060  (22.07% / 34.56%)
Short Range (<20,000bp): 96,570  (10.87% / 17.02%)
Long Range (>20,000bp): 99,490  (11.20% / 17.54%)