Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.18" 2023-01-17; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -d /storage2/nyt/Projects/Juicer-Out/2023-03-14_Moscow/MoPh/MoPh11 -s DpnII -y /storage/nyt/Data/Genomes/MoPh/cat_hg19_canonical.rs.DpnII_AsteI2_V4.MboI.juicer.txt -p /storage/nyt/Data/Genomes/MoPh/cat_hg19_canonical_AsteI2_V4.chrom.sizes -z /storage/nyt/Data/Genomes/MoPh/cat_hg19_canonical_AsteI2_V4.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
Sequenced Read Pairs:  888,481
 Normal Paired: 429,756 (48.37%)
 Chimeric Paired: 217,001 (24.42%)
 Chimeric Ambiguous: 120,899 (13.61%)
 Unmapped: 120,825 (13.60%)
 Ligation Motif Present: 635,760 (71.56%)
Alignable (Normal+Chimeric Paired): 646,757 (72.79%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-03-20T22:34:29,460]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 567,309 (63.85%)
PCR Duplicates: 79,396 (8.94%)
Optical Duplicates: 52 (0.01%)
Library Complexity Estimate: 2,413,512
Intra-fragment Reads: 153,714 (17.30% / 27.10%)
Below MAPQ Threshold: 130,774 (14.72% / 23.05%)
Hi-C Contacts: 282,821 (31.83% / 49.85%)
 Ligation Motif Present: 216,969  (24.42% / 38.25%)
 3' Bias (Long Range): 60% - 40%
 Pair Type intra chrom %(L-I-O-R): 16% - 51% - 16% - 16%
 Pair Type inter chrom %(L-I-O-R): 26% - 25% - 25% - 24%
 DE: 21%
 Cis/all (FF and RR orient): 51.7%
Inter-chromosomal: 107,678  (12.12% / 18.98%)
Intra-chromosomal: 175,143  (19.71% / 30.87%)
Short Range (<20,000bp): 88,991  (10.02% / 15.69%)
Long Range (>20,000bp): 86,152  (9.70% / 15.19%)