Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.18" 2023-01-17; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -d /storage2/nyt/Projects/Juicer-Out/2023-03-21_Phil/MoPh/MoPh11 -s DpnII -y /storage/nyt/Data/Genomes/MoPh/cat_hg19_canonical.rs.DpnII_AsteI2_V4.MboI.juicer.txt -p /storage/nyt/Data/Genomes/MoPh/cat_hg19_canonical_AsteI2_V4.chrom.sizes -z /storage/nyt/Data/Genomes/MoPh/cat_hg19_canonical_AsteI2_V4.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  19,243
 Normal Paired: 8,369 (43.49%)
 Chimeric Paired: 3,419 (17.77%)
 Chimeric Ambiguous: 1,531 (7.96%)
 Unmapped: 5,924 (30.79%)
 Ligation Motif Present: 13,771 (71.56%)
Alignable (Normal+Chimeric Paired): 11,788 (61.26%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-03-21T19:14:34,562]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 10,600 (55.08%)
PCR Duplicates: 1,185 (6.16%)
Optical Duplicates: 3 (0.02%)
Library Complexity Estimate: 54,603
Intra-fragment Reads: 3,020 (15.69% / 28.49%)
Below MAPQ Threshold: 2,507 (13.03% / 23.65%)
Hi-C Contacts: 5,073 (26.36% / 47.86%)
 Ligation Motif Present: 3,970  (20.63% / 37.45%)
 3' Bias (Long Range): 61% - 39%
 Pair Type intra chrom %(L-I-O-R): 12% - 64% - 12% - 12%
 Pair Type inter chrom %(L-I-O-R): 27% - 24% - 26% - 24%
 DE: 29%
 Cis/all (FF and RR orient): 36.6%
Inter-chromosomal: 2,292  (11.91% / 21.62%)
Intra-chromosomal: 2,781  (14.45% / 26.24%)
Short Range (<20,000bp): 1,796  (9.33% / 16.94%)
Long Range (>20,000bp): 985  (5.12% / 9.29%)