Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 4 threads; openjdk version "17.0.7" 2023-04-18; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -d /storage3/nyt/Projects/Juicer-Out/2023-05-18_BGI/poolA/MoPh11 -s DpnII -y /storage/nyt/Data/Genomes/MoPh/cat_hg19_canonical_AsteI2_V4_pURC-Puro_mosX_DpnII.txt -p /storage/nyt/Data/Genomes/MoPh/cat_hg19_canonical_AsteI2_V4_pURC-Puro_mosX.chrom.sizes -z /storage/nyt/Data/Genomes/MoPh/cat_hg19_canonical_AsteI2_V4_pURC-Puro_mosX.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 4                                                                                                                                                                                                                                                                                                                                                                                                                                                          
Sequenced Read Pairs:  34,505,326
 Normal Paired: 16,685,884 (48.36%)
 Chimeric Paired: 8,955,255 (25.95%)
 Chimeric Ambiguous: 4,532,771 (13.14%)
 Unmapped: 4,331,416 (12.55%)
 Ligation Motif Present: 25,029,516 (72.54%)
Alignable (Normal+Chimeric Paired): 25,641,139 (74.31%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-06-19T20:38:52,418]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 17,770,702 (51.50%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 7,870,437 (22.81%)
Library Complexity Estimate: 0
Intra-fragment Reads: 694,919 (2.01% / 3.91%)
Below MAPQ Threshold: 2,744,429 (7.95% / 15.44%)
Hi-C Contacts: 14,331,354 (41.53% / 80.65%)
 Ligation Motif Present: 10,753,400  (31.16% / 60.51%)
 3' Bias (Long Range): 62% - 38%
 Pair Type intra chrom %(L-I-O-R): 12% - 64% - 12% - 12%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 35%
 Cis/all (FF and RR orient): 50.7%
Inter-chromosomal: 4,561,574  (13.22% / 25.67%)
Intra-chromosomal: 9,769,780  (28.31% / 54.98%)
Short Range (<20,000bp): 6,365,610  (18.45% / 35.82%)
Long Range (>20,000bp): 3,404,170  (9.87% / 19.16%)