Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 4 threads; openjdk version "17.0.7" 2023-04-18; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -d /storage3/nyt/Projects/Juicer-Out/2023-05-18_BGI/poolB/MoPh11 -s DpnII -y /storage/nyt/Data/Genomes/MoPh/cat_hg19_canonical_AsteI2_V4_pURC-Puro_mosX_DpnII.txt -p /storage/nyt/Data/Genomes/MoPh/cat_hg19_canonical_AsteI2_V4_pURC-Puro_mosX.chrom.sizes -z /storage/nyt/Data/Genomes/MoPh/cat_hg19_canonical_AsteI2_V4_pURC-Puro_mosX.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 4                                                                                                                                                                                                                                                                                                                                                                                                                                                          
Sequenced Read Pairs:  58,061,758
 Normal Paired: 25,742,761 (44.34%)
 Chimeric Paired: 10,445,515 (17.99%)
 Chimeric Ambiguous: 4,569,009 (7.87%)
 Unmapped: 17,304,473 (29.80%)
 Ligation Motif Present: 42,427,344 (73.07%)
Alignable (Normal+Chimeric Paired): 36,188,276 (62.33%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-06-20T11:19:00,247]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 9,488,112 (16.34%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 26,700,164 (45.99%)
Library Complexity Estimate: 0
Intra-fragment Reads: 276,582 (0.48% / 2.92%)
Below MAPQ Threshold: 2,220,544 (3.82% / 23.40%)
Hi-C Contacts: 6,990,986 (12.04% / 73.68%)
 Ligation Motif Present: 5,357,985  (9.23% / 56.47%)
 3' Bias (Long Range): 59% - 41%
 Pair Type intra chrom %(L-I-O-R): 13% - 62% - 12% - 13%
 Pair Type inter chrom %(L-I-O-R): 26% - 25% - 25% - 24%
 DE: 21%
 Cis/all (FF and RR orient): 27.2%
Inter-chromosomal: 4,024,108  (6.93% / 42.41%)
Intra-chromosomal: 2,966,878  (5.11% / 31.27%)
Short Range (<20,000bp): 1,817,974  (3.13% / 19.16%)
Long Range (>20,000bp): 1,148,904  (1.98% / 12.11%)