Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 4 threads; openjdk version "17.0.7" 2023-04-18; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -d /storage3/nyt/Projects/Juicer-Out/2023-05-18_BGI/poolB/MoPh11 -s DpnII -y /storage/nyt/Data/Genomes/MoPh/cat_hg19_canonical_AsteI2_V4_pURC-Puro_mosX_DpnII.txt -p /storage/nyt/Data/Genomes/MoPh/cat_hg19_canonical_AsteI2_V4_pURC-Puro_mosX.chrom.sizes -z /storage/nyt/Data/Genomes/MoPh/cat_hg19_canonical_AsteI2_V4_pURC-Puro_mosX.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 4                                                                                                                                                                                                                                                                                                                                                                                                                                                          
Sequenced Read Pairs:  58,061,758
 Normal Paired: 25,742,761 (44.34%)
 Chimeric Paired: 10,445,515 (17.99%)
 Chimeric Ambiguous: 4,569,009 (7.87%)
 Unmapped: 17,304,473 (29.80%)
 Ligation Motif Present: 42,427,344 (73.07%)
Alignable (Normal+Chimeric Paired): 36,188,276 (62.33%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-06-20T11:19:00,247]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 9,488,112 (16.34%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 26,700,164 (45.99%)
Library Complexity Estimate: 0
Intra-fragment Reads: 276,582 (0.48% / 2.92%)
Below MAPQ Threshold: 3,617,682 (6.23% / 38.13%)
Hi-C Contacts: 5,593,848 (9.63% / 58.96%)
 Ligation Motif Present: 4,320,284  (7.44% / 45.53%)
 3' Bias (Long Range): 59% - 41%
 Pair Type intra chrom %(L-I-O-R): 12% - 64% - 12% - 12%
 Pair Type inter chrom %(L-I-O-R): 26% - 25% - 25% - 24%
 DE: 23%
 Cis/all (FF and RR orient): 27.5%
Inter-chromosomal: 3,128,551  (5.39% / 32.97%)
Intra-chromosomal: 2,465,297  (4.25% / 25.98%)
Short Range (<20,000bp): 1,578,769  (2.72% / 16.64%)
Long Range (>20,000bp): 886,528  (1.53% / 9.34%)