Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.17" 2022-10-18; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -d /storage2/nyt/Projects/Juicer-Out/2022-11-07_BGI_Moscow/MoPh/MoPh14 -s DpnII -y /storage2/nyt/Data/Genomes/MoPh/cat_hg19_canonical.rs.DpnII_AsteI2_V4.MboI.juicer.txt -p /storage2/nyt/Data/Genomes/MoPh/cat_hg19_canonical_AsteI2_V4.chrom.sizes -z /storage2/nyt/Data/Genomes/MoPh/cat_hg19_canonical_AsteI2_V4.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
Sequenced Read Pairs:  22,259,795
 Normal Paired: 16,928,535 (76.05%)
 Chimeric Paired: 3,778,602 (16.98%)
 Chimeric Ambiguous: 1,381,355 (6.21%)
 Unmapped: 171,303 (0.77%)
 Ligation Motif Present: 11,154,677 (50.11%)
Alignable (Normal+Chimeric Paired): 20,707,137 (93.02%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2022-11-22T20:16:33,201]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 18,957,125 (85.16%)
PCR Duplicates: 1,750,012 (7.86%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 115,505,061
Intra-fragment Reads: 5,471,979 (24.58% / 28.87%)
Below MAPQ Threshold: 1,879,688 (8.44% / 9.92%)
Hi-C Contacts: 11,605,458 (52.14% / 61.22%)
 Ligation Motif Present: 6,481,695  (29.12% / 34.19%)
 3' Bias (Long Range): 60% - 40%
 Pair Type intra chrom %(L-I-O-R): 16% - 51% - 16% - 16%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 25%
 Cis/all (FF and RR orient): 63.2%
Inter-chromosomal: 3,214,156  (14.44% / 16.95%)
Intra-chromosomal: 8,391,302  (37.70% / 44.26%)
Short Range (<20,000bp): 4,364,069  (19.61% / 23.02%)
Long Range (>20,000bp): 4,027,233  (18.09% / 21.24%)