Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.18" 2023-01-17; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -d /storage2/nyt/Projects/Juicer-Out/2023-03-14_Moscow/MoPh/MoPh14 -s DpnII -y /storage/nyt/Data/Genomes/MoPh/cat_hg19_canonical.rs.DpnII_AsteI2_V4.MboI.juicer.txt -p /storage/nyt/Data/Genomes/MoPh/cat_hg19_canonical_AsteI2_V4.chrom.sizes -z /storage/nyt/Data/Genomes/MoPh/cat_hg19_canonical_AsteI2_V4.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
Sequenced Read Pairs:  721,032
 Normal Paired: 405,494 (56.24%)
 Chimeric Paired: 204,138 (28.31%)
 Chimeric Ambiguous: 95,363 (13.23%)
 Unmapped: 16,037 (2.22%)
 Ligation Motif Present: 441,763 (61.27%)
Alignable (Normal+Chimeric Paired): 609,632 (84.55%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-03-20T22:39:35,080]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 584,085 (81.01%)
PCR Duplicates: 25,488 (3.53%)
Optical Duplicates: 59 (0.01%)
Library Complexity Estimate: 7,084,658
Intra-fragment Reads: 190,662 (26.44% / 32.64%)
Below MAPQ Threshold: 61,153 (8.48% / 10.47%)
Hi-C Contacts: 332,270 (46.08% / 56.89%)
 Ligation Motif Present: 226,975  (31.48% / 38.86%)
 3' Bias (Long Range): 57% - 43%
 Pair Type intra chrom %(L-I-O-R): 17% - 48% - 17% - 17%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 20%
 Cis/all (FF and RR orient): 58.8%
Inter-chromosomal: 108,814  (15.09% / 18.63%)
Intra-chromosomal: 223,456  (30.99% / 38.26%)
Short Range (<20,000bp): 109,942  (15.25% / 18.82%)
Long Range (>20,000bp): 113,514  (15.74% / 19.43%)