Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.18" 2023-01-17; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -d /storage2/nyt/Projects/Juicer-Out/2023-03-21_Phil/MoPh/MoPh14 -s DpnII -y /storage/nyt/Data/Genomes/MoPh/cat_hg19_canonical.rs.DpnII_AsteI2_V4.MboI.juicer.txt -p /storage/nyt/Data/Genomes/MoPh/cat_hg19_canonical_AsteI2_V4.chrom.sizes -z /storage/nyt/Data/Genomes/MoPh/cat_hg19_canonical_AsteI2_V4.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  1,754
 Normal Paired: 889 (50.68%)
 Chimeric Paired: 343 (19.56%)
 Chimeric Ambiguous: 203 (11.57%)
 Unmapped: 319 (18.19%)
 Ligation Motif Present: 939 (53.53%)
Alignable (Normal+Chimeric Paired): 1,232 (70.24%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-03-21T19:15:30,830]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 1,176 (67.05%)
PCR Duplicates: 56 (3.19%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 13,138
Intra-fragment Reads: 369 (21.04% / 31.38%)
Below MAPQ Threshold: 344 (19.61% / 29.25%)
Hi-C Contacts: 463 (26.40% / 39.37%)
 Ligation Motif Present: 297  (16.93% / 25.26%)
 3' Bias (Long Range): 58% - 42%
 Pair Type intra chrom %(L-I-O-R): 13% - 63% - 15% - 9%
 Pair Type inter chrom %(L-I-O-R): 28% - 21% - 27% - 24%
 DE: 30%
 Cis/all (FF and RR orient): 32.9%
Inter-chromosomal: 215  (12.26% / 18.28%)
Intra-chromosomal: 248  (14.14% / 21.09%)
Short Range (<20,000bp): 164  (9.35% / 13.95%)
Long Range (>20,000bp): 84  (4.79% / 7.14%)