Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 4 threads; openjdk version "17.0.7" 2023-04-18; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -d /storage3/nyt/Projects/Juicer-Out/2023-05-18_BGI/poolA/MoPh14 -s DpnII -y /storage/nyt/Data/Genomes/MoPh/cat_hg19_canonical_AsteI2_V4_pURC-Puro_mosX_DpnII.txt -p /storage/nyt/Data/Genomes/MoPh/cat_hg19_canonical_AsteI2_V4_pURC-Puro_mosX.chrom.sizes -z /storage/nyt/Data/Genomes/MoPh/cat_hg19_canonical_AsteI2_V4_pURC-Puro_mosX.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 4                                                                                                                                                                                                                                                                                                                                                                                                                                                          
Sequenced Read Pairs:  32,094,214
 Normal Paired: 17,901,674 (55.78%)
 Chimeric Paired: 9,376,105 (29.21%)
 Chimeric Ambiguous: 4,198,424 (13.08%)
 Unmapped: 618,011 (1.93%)
 Ligation Motif Present: 19,587,719 (61.03%)
Alignable (Normal+Chimeric Paired): 27,277,779 (84.99%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-06-19T23:57:07,763]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 21,362,195 (66.56%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 5,915,584 (18.43%)
Library Complexity Estimate: 0
Intra-fragment Reads: 943,305 (2.94% / 4.42%)
Below MAPQ Threshold: 2,606,064 (8.12% / 12.20%)
Hi-C Contacts: 17,812,826 (55.50% / 83.38%)
 Ligation Motif Present: 11,338,856  (35.33% / 53.08%)
 3' Bias (Long Range): 54% - 46%
 Pair Type intra chrom %(L-I-O-R): 12% - 63% - 12% - 12%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 38%
 Cis/all (FF and RR orient): 59.9%
Inter-chromosomal: 4,436,606  (13.82% / 20.77%)
Intra-chromosomal: 13,376,220  (41.68% / 62.62%)
Short Range (<20,000bp): 8,812,846  (27.46% / 41.25%)
Long Range (>20,000bp): 4,563,374  (14.22% / 21.36%)