Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 4 threads; openjdk version "17.0.7" 2023-04-18; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -d /storage3/nyt/Projects/Juicer-Out/2023-05-18_BGI/poolB/MoPh14 -s DpnII -y /storage/nyt/Data/Genomes/MoPh/cat_hg19_canonical_AsteI2_V4_pURC-Puro_mosX_DpnII.txt -p /storage/nyt/Data/Genomes/MoPh/cat_hg19_canonical_AsteI2_V4_pURC-Puro_mosX.chrom.sizes -z /storage/nyt/Data/Genomes/MoPh/cat_hg19_canonical_AsteI2_V4_pURC-Puro_mosX.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 4                                                                                                                                                                                                                                                                                                                                                                                                                                                          
Sequenced Read Pairs:  5,470,229
 Normal Paired: 2,718,395 (49.69%)
 Chimeric Paired: 1,064,466 (19.46%)
 Chimeric Ambiguous: 711,387 (13.00%)
 Unmapped: 975,981 (17.84%)
 Ligation Motif Present: 3,058,000 (55.90%)
Alignable (Normal+Chimeric Paired): 3,782,861 (69.15%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-06-20T11:57:43,155]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 2,353,699 (43.03%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 1,429,162 (26.13%)
Library Complexity Estimate: 0
Intra-fragment Reads: 89,556 (1.64% / 3.80%)
Below MAPQ Threshold: 766,800 (14.02% / 32.58%)
Hi-C Contacts: 1,497,343 (27.37% / 63.62%)
 Ligation Motif Present: 906,334  (16.57% / 38.51%)
 3' Bias (Long Range): 51% - 49%
 Pair Type intra chrom %(L-I-O-R): 10% - 71% - 10% - 10%
 Pair Type inter chrom %(L-I-O-R): 26% - 25% - 25% - 24%
 DE: 42%
 Cis/all (FF and RR orient): 46.7%
Inter-chromosomal: 463,625  (8.48% / 19.70%)
Intra-chromosomal: 1,033,718  (18.90% / 43.92%)
Short Range (<20,000bp): 752,201  (13.75% / 31.96%)
Long Range (>20,000bp): 281,517  (5.15% / 11.96%)