Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.17" 2022-10-18; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -d /storage2/nyt/Projects/Juicer-Out/2022-11-07_BGI_Moscow/MoPh/MoPh15 -s DpnII -y /storage2/nyt/Data/Genomes/MoPh/cat_hg19_canonical.rs.DpnII_AsteI2_V4.MboI.juicer.txt -p /storage2/nyt/Data/Genomes/MoPh/cat_hg19_canonical_AsteI2_V4.chrom.sizes -z /storage2/nyt/Data/Genomes/MoPh/cat_hg19_canonical_AsteI2_V4.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
Sequenced Read Pairs:  25,314,658
 Normal Paired: 18,802,095 (74.27%)
 Chimeric Paired: 4,557,591 (18.00%)
 Chimeric Ambiguous: 1,711,314 (6.76%)
 Unmapped: 243,658 (0.96%)
 Ligation Motif Present: 13,254,045 (52.36%)
Alignable (Normal+Chimeric Paired): 23,359,686 (92.28%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2022-11-22T21:18:46,096]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 21,752,721 (85.93%)
PCR Duplicates: 1,606,965 (6.35%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 161,905,051
Intra-fragment Reads: 6,095,081 (24.08% / 28.02%)
Below MAPQ Threshold: 3,368,723 (13.31% / 15.49%)
Hi-C Contacts: 12,288,917 (48.54% / 56.49%)
 Ligation Motif Present: 7,053,015  (27.86% / 32.42%)
 3' Bias (Long Range): 62% - 38%
 Pair Type intra chrom %(L-I-O-R): 16% - 52% - 16% - 16%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 26%
 Cis/all (FF and RR orient): 64.5%
Inter-chromosomal: 3,227,540  (12.75% / 14.84%)
Intra-chromosomal: 9,061,377  (35.79% / 41.66%)
Short Range (<20,000bp): 4,653,378  (18.38% / 21.39%)
Long Range (>20,000bp): 4,407,999  (17.41% / 20.26%)