Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.18" 2023-01-17; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -d /storage2/nyt/Projects/Juicer-Out/2023-03-14_Moscow/MoPh/MoPh15 -s DpnII -y /storage/nyt/Data/Genomes/MoPh/cat_hg19_canonical.rs.DpnII_AsteI2_V4.MboI.juicer.txt -p /storage/nyt/Data/Genomes/MoPh/cat_hg19_canonical_AsteI2_V4.chrom.sizes -z /storage/nyt/Data/Genomes/MoPh/cat_hg19_canonical_AsteI2_V4.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
Sequenced Read Pairs:  1,017,178
 Normal Paired: 528,327 (51.94%)
 Chimeric Paired: 270,245 (26.57%)
 Chimeric Ambiguous: 148,873 (14.64%)
 Unmapped: 69,733 (6.86%)
 Ligation Motif Present: 643,731 (63.29%)
Alignable (Normal+Chimeric Paired): 798,572 (78.51%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-03-20T22:44:55,564]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 722,298 (71.01%)
PCR Duplicates: 76,219 (7.49%)
Optical Duplicates: 55 (0.01%)
Library Complexity Estimate: 3,912,239
Intra-fragment Reads: 215,426 (21.18% / 29.83%)
Below MAPQ Threshold: 152,307 (14.97% / 21.09%)
Hi-C Contacts: 354,565 (34.86% / 49.09%)
 Ligation Motif Present: 254,965  (25.07% / 35.30%)
 3' Bias (Long Range): 58% - 42%
 Pair Type intra chrom %(L-I-O-R): 17% - 49% - 17% - 17%
 Pair Type inter chrom %(L-I-O-R): 26% - 25% - 25% - 24%
 DE: 20%
 Cis/all (FF and RR orient): 55.4%
Inter-chromosomal: 126,497  (12.44% / 17.51%)
Intra-chromosomal: 228,068  (22.42% / 31.58%)
Short Range (<20,000bp): 110,007  (10.81% / 15.23%)
Long Range (>20,000bp): 118,061  (11.61% / 16.35%)