Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.18" 2023-01-17; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -d /storage2/nyt/Projects/Juicer-Out/2023-03-21_Phil/MoPh/MoPh15 -s DpnII -y /storage/nyt/Data/Genomes/MoPh/cat_hg19_canonical.rs.DpnII_AsteI2_V4.MboI.juicer.txt -p /storage/nyt/Data/Genomes/MoPh/cat_hg19_canonical_AsteI2_V4.chrom.sizes -z /storage/nyt/Data/Genomes/MoPh/cat_hg19_canonical_AsteI2_V4.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  10,352
 Normal Paired: 5,048 (48.76%)
 Chimeric Paired: 1,895 (18.31%)
 Chimeric Ambiguous: 1,080 (10.43%)
 Unmapped: 2,329 (22.50%)
 Ligation Motif Present: 6,070 (58.64%)
Alignable (Normal+Chimeric Paired): 6,943 (67.07%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-03-21T19:16:17,601]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 5,911 (57.10%)
PCR Duplicates: 1,026 (9.91%)
Optical Duplicates: 6 (0.06%)
Library Complexity Estimate: 21,076
Intra-fragment Reads: 1,670 (16.13% / 28.25%)
Below MAPQ Threshold: 1,939 (18.73% / 32.80%)
Hi-C Contacts: 2,302 (22.24% / 38.94%)
 Ligation Motif Present: 1,586  (15.32% / 26.83%)
 3' Bias (Long Range): 60% - 40%
 Pair Type intra chrom %(L-I-O-R): 12% - 69% - 10% - 10%
 Pair Type inter chrom %(L-I-O-R): 28% - 23% - 26% - 23%
 DE: 26%
 Cis/all (FF and RR orient): 26.0%
Inter-chromosomal: 1,262  (12.19% / 21.35%)
Intra-chromosomal: 1,040  (10.05% / 17.59%)
Short Range (<20,000bp): 717  (6.93% / 12.13%)
Long Range (>20,000bp): 323  (3.12% / 5.46%)