Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 4 threads; openjdk version "17.0.7" 2023-04-18; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -d /storage3/nyt/Projects/Juicer-Out/2023-05-18_BGI/poolA/MoPh15 -s DpnII -y /storage/nyt/Data/Genomes/MoPh/cat_hg19_canonical_AsteI2_V4_pURC-Puro_mosX_DpnII.txt -p /storage/nyt/Data/Genomes/MoPh/cat_hg19_canonical_AsteI2_V4_pURC-Puro_mosX.chrom.sizes -z /storage/nyt/Data/Genomes/MoPh/cat_hg19_canonical_AsteI2_V4_pURC-Puro_mosX.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 4                                                                                                                                                                                                                                                                                                                                                                                                                                                          
Sequenced Read Pairs:  38,858,553
 Normal Paired: 20,427,276 (52.57%)
 Chimeric Paired: 10,686,101 (27.50%)
 Chimeric Ambiguous: 5,528,048 (14.23%)
 Unmapped: 2,217,128 (5.71%)
 Ligation Motif Present: 24,443,397 (62.90%)
Alignable (Normal+Chimeric Paired): 31,113,377 (80.07%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-06-20T03:49:09,258]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 23,246,659 (59.82%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 7,866,718 (20.24%)
Library Complexity Estimate: 0
Intra-fragment Reads: 1,052,102 (2.71% / 4.53%)
Below MAPQ Threshold: 3,266,050 (8.40% / 14.05%)
Hi-C Contacts: 18,928,507 (48.71% / 81.42%)
 Ligation Motif Present: 12,580,685  (32.38% / 54.12%)
 3' Bias (Long Range): 57% - 43%
 Pair Type intra chrom %(L-I-O-R): 13% - 63% - 12% - 13%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 35%
 Cis/all (FF and RR orient): 54.4%
Inter-chromosomal: 5,594,117  (14.40% / 24.06%)
Intra-chromosomal: 13,334,390  (34.32% / 57.36%)
Short Range (<20,000bp): 8,574,166  (22.07% / 36.88%)
Long Range (>20,000bp): 4,760,224  (12.25% / 20.48%)