Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 4 threads; openjdk version "17.0.7" 2023-04-18; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -d /storage3/nyt/Projects/Juicer-Out/2023-05-18_BGI/poolB/MoPh15 -s DpnII -y /storage/nyt/Data/Genomes/MoPh/cat_hg19_canonical_AsteI2_V4_pURC-Puro_mosX_DpnII.txt -p /storage/nyt/Data/Genomes/MoPh/cat_hg19_canonical_AsteI2_V4_pURC-Puro_mosX.chrom.sizes -z /storage/nyt/Data/Genomes/MoPh/cat_hg19_canonical_AsteI2_V4_pURC-Puro_mosX.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 4                                                                                                                                                                                                                                                                                                                                                                                                                                                          
Sequenced Read Pairs:  27,328,749
 Normal Paired: 13,680,609 (50.06%)
 Chimeric Paired: 5,032,451 (18.41%)
 Chimeric Ambiguous: 3,048,802 (11.16%)
 Unmapped: 5,566,887 (20.37%)
 Ligation Motif Present: 16,440,418 (60.16%)
Alignable (Normal+Chimeric Paired): 18,713,060 (68.47%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-06-20T13:32:42,126]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 6,960,038 (25.47%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 11,753,022 (43.01%)
Library Complexity Estimate: 0
Intra-fragment Reads: 230,042 (0.84% / 3.31%)
Below MAPQ Threshold: 2,775,448 (10.16% / 39.88%)
Hi-C Contacts: 3,954,548 (14.47% / 56.82%)
 Ligation Motif Present: 2,717,760  (9.94% / 39.05%)
 3' Bias (Long Range): 55% - 45%
 Pair Type intra chrom %(L-I-O-R): 11% - 68% - 10% - 11%
 Pair Type inter chrom %(L-I-O-R): 26% - 25% - 25% - 24%
 DE: 30%
 Cis/all (FF and RR orient): 32.0%
Inter-chromosomal: 1,883,474  (6.89% / 27.06%)
Intra-chromosomal: 2,071,074  (7.58% / 29.76%)
Short Range (<20,000bp): 1,428,935  (5.23% / 20.53%)
Long Range (>20,000bp): 642,139  (2.35% / 9.23%)