Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.17" 2022-10-18; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -d /storage2/nyt/Projects/Juicer-Out/2022-11-07_BGI_Moscow/MoPh/MoPh7 -s DpnII -y /storage2/nyt/Data/Genomes/MoPh/cat_hg19_canonical.rs.DpnII_AsteI2_V4.MboI.juicer.txt -p /storage2/nyt/Data/Genomes/MoPh/cat_hg19_canonical_AsteI2_V4.chrom.sizes -z /storage2/nyt/Data/Genomes/MoPh/cat_hg19_canonical_AsteI2_V4.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  55,351,510
 Normal Paired: 36,620,631 (66.16%)
 Chimeric Paired: 13,953,017 (25.21%)
 Chimeric Ambiguous: 4,394,383 (7.94%)
 Unmapped: 383,479 (0.69%)
 Ligation Motif Present: 42,527,534 (76.83%)
Alignable (Normal+Chimeric Paired): 50,573,648 (91.37%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2022-11-22T23:33:42,986]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 49,595,685 (89.60%)
PCR Duplicates: 977,963 (1.77%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 1,290,751,144
Intra-fragment Reads: 13,042,524 (23.56% / 26.30%)
Below MAPQ Threshold: 7,814,655 (14.12% / 15.76%)
Hi-C Contacts: 28,738,506 (51.92% / 57.95%)
 Ligation Motif Present: 21,605,952  (39.03% / 43.56%)
 3' Bias (Long Range): 70% - 30%
 Pair Type intra chrom %(L-I-O-R): 17% - 50% - 16% - 17%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 27%
 Cis/all (FF and RR orient): 73.5%
Inter-chromosomal: 5,592,259  (10.10% / 11.28%)
Intra-chromosomal: 23,146,247  (41.82% / 46.67%)
Short Range (<20,000bp): 11,830,150  (21.37% / 23.85%)
Long Range (>20,000bp): 11,316,097  (20.44% / 22.82%)