Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.18" 2023-01-17; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -d /storage2/nyt/Projects/Juicer-Out/2023-03-14_Moscow/MoPh/MoPh7 -s DpnII -y /storage/nyt/Data/Genomes/MoPh/cat_hg19_canonical.rs.DpnII_AsteI2_V4.MboI.juicer.txt -p /storage/nyt/Data/Genomes/MoPh/cat_hg19_canonical_AsteI2_V4.chrom.sizes -z /storage/nyt/Data/Genomes/MoPh/cat_hg19_canonical_AsteI2_V4.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
Sequenced Read Pairs:  780,594
 Normal Paired: 361,124 (46.26%)
 Chimeric Paired: 253,305 (32.45%)
 Chimeric Ambiguous: 125,884 (16.13%)
 Unmapped: 40,281 (5.16%)
 Ligation Motif Present: 674,420 (86.40%)
Alignable (Normal+Chimeric Paired): 614,429 (78.71%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-03-20T22:49:50,636]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 588,639 (75.41%)
PCR Duplicates: 25,737 (3.30%)
Optical Duplicates: 53 (0.01%)
Library Complexity Estimate: 7,126,726
Intra-fragment Reads: 169,096 (21.66% / 28.73%)
Below MAPQ Threshold: 123,029 (15.76% / 20.90%)
Hi-C Contacts: 296,514 (37.99% / 50.37%)
 Ligation Motif Present: 257,272  (32.96% / 43.71%)
 3' Bias (Long Range): 64% - 36%
 Pair Type intra chrom %(L-I-O-R): 17% - 49% - 17% - 17%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 24%
 DE: 23%
 Cis/all (FF and RR orient): 65.3%
Inter-chromosomal: 79,540  (10.19% / 13.51%)
Intra-chromosomal: 216,974  (27.80% / 36.86%)
Short Range (<20,000bp): 108,141  (13.85% / 18.37%)
Long Range (>20,000bp): 108,833  (13.94% / 18.49%)