Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.18" 2023-01-17; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -d /storage2/nyt/Projects/Juicer-Out/2023-03-21_Phil/MoPh/MoPh7 -s DpnII -y /storage/nyt/Data/Genomes/MoPh/cat_hg19_canonical.rs.DpnII_AsteI2_V4.MboI.juicer.txt -p /storage/nyt/Data/Genomes/MoPh/cat_hg19_canonical_AsteI2_V4.chrom.sizes -z /storage/nyt/Data/Genomes/MoPh/cat_hg19_canonical_AsteI2_V4.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
Sequenced Read Pairs:  4,415
 Normal Paired: 1,949 (44.14%)
 Chimeric Paired: 921 (20.86%)
 Chimeric Ambiguous: 554 (12.55%)
 Unmapped: 991 (22.45%)
 Ligation Motif Present: 3,679 (83.33%)
Alignable (Normal+Chimeric Paired): 2,870 (65.01%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-03-21T19:17:23,940]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 2,831 (64.12%)
PCR Duplicates: 38 (0.86%)
Optical Duplicates: 1 (0.02%)
Library Complexity Estimate: 107,346
Intra-fragment Reads: 863 (19.55% / 30.48%)
Below MAPQ Threshold: 936 (21.20% / 33.06%)
Hi-C Contacts: 1,032 (23.37% / 36.45%)
 Ligation Motif Present: 872  (19.75% / 30.80%)
 3' Bias (Long Range): 58% - 42%
 Pair Type intra chrom %(L-I-O-R): 10% - 68% - 12% - 11%
 Pair Type inter chrom %(L-I-O-R): 26% - 27% - 26% - 21%
 DE: 29%
 Cis/all (FF and RR orient): 28.5%
Inter-chromosomal: 535  (12.12% / 18.90%)
Intra-chromosomal: 497  (11.26% / 17.56%)
Short Range (<20,000bp): 325  (7.36% / 11.48%)
Long Range (>20,000bp): 172  (3.90% / 6.08%)