Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 4 threads; openjdk version "17.0.7" 2023-04-18; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -d /storage3/nyt/Projects/Juicer-Out/2023-05-18_BGI/poolA/MoPh7 -s DpnII -y /storage/nyt/Data/Genomes/MoPh/cat_hg19_canonical_AsteI2_V4_pURC-Puro_mosX_DpnII.txt -p /storage/nyt/Data/Genomes/MoPh/cat_hg19_canonical_AsteI2_V4_pURC-Puro_mosX.chrom.sizes -z /storage/nyt/Data/Genomes/MoPh/cat_hg19_canonical_AsteI2_V4_pURC-Puro_mosX.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 4                                                                                                                                                                                                                                                                                                                                                                                                                                                           
Sequenced Read Pairs:  28,003,802
 Normal Paired: 12,724,618 (45.44%)
 Chimeric Paired: 9,343,616 (33.37%)
 Chimeric Ambiguous: 4,572,737 (16.33%)
 Unmapped: 1,362,831 (4.87%)
 Ligation Motif Present: 24,253,135 (86.61%)
Alignable (Normal+Chimeric Paired): 22,068,234 (78.80%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-06-20T06:50:28,012]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 18,445,393 (65.87%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 3,622,841 (12.94%)
Library Complexity Estimate: 0
Intra-fragment Reads: 498,166 (1.78% / 2.70%)
Below MAPQ Threshold: 2,846,742 (10.17% / 15.43%)
Hi-C Contacts: 15,100,485 (53.92% / 81.87%)
 Ligation Motif Present: 13,070,547  (46.67% / 70.86%)
 3' Bias (Long Range): 74% - 26%
 Pair Type intra chrom %(L-I-O-R): 12% - 63% - 12% - 12%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 40%
 Cis/all (FF and RR orient): 64.2%
Inter-chromosomal: 3,250,828  (11.61% / 17.62%)
Intra-chromosomal: 11,849,657  (42.31% / 64.24%)
Short Range (<20,000bp): 7,768,226  (27.74% / 42.11%)
Long Range (>20,000bp): 4,081,431  (14.57% / 22.13%)