Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 4 threads; openjdk version "17.0.7" 2023-04-18; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -d /storage3/nyt/Projects/Juicer-Out/2023-05-18_BGI/poolA/MoPh7 -s DpnII -y /storage/nyt/Data/Genomes/MoPh/cat_hg19_canonical_AsteI2_V4_pURC-Puro_mosX_DpnII.txt -p /storage/nyt/Data/Genomes/MoPh/cat_hg19_canonical_AsteI2_V4_pURC-Puro_mosX.chrom.sizes -z /storage/nyt/Data/Genomes/MoPh/cat_hg19_canonical_AsteI2_V4_pURC-Puro_mosX.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 4 Sequenced Read Pairs: 28,003,802 Normal Paired: 12,724,618 (45.44%) Chimeric Paired: 9,343,616 (33.37%) Chimeric Ambiguous: 4,572,737 (16.33%) Unmapped: 1,362,831 (4.87%) Ligation Motif Present: 24,253,135 (86.61%) Alignable (Normal+Chimeric Paired): 22,068,234 (78.80%) WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance. WARN [2023-06-20T06:50:28,012] [Globals.java:138] [main] Development mode is enabled Unique Reads: 18,445,393 (65.87%) PCR Duplicates: 0 (0.00%) Optical Duplicates: 3,622,841 (12.94%) Library Complexity Estimate: 0 Intra-fragment Reads: 498,166 (1.78% / 2.70%) Below MAPQ Threshold: 4,589,625 (16.39% / 24.88%) Hi-C Contacts: 13,357,602 (47.70% / 72.42%) Ligation Motif Present: 11,570,239 (41.32% / 62.73%) 3' Bias (Long Range): 74% - 26% Pair Type intra chrom %(L-I-O-R): 12% - 64% - 12% - 12% Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25% DE: 42% Cis/all (FF and RR orient): 66.6% Inter-chromosomal: 2,604,122 (9.30% / 14.12%) Intra-chromosomal: 10,753,480 (38.40% / 58.30%) Short Range (<20,000bp): 7,135,437 (25.48% / 38.68%) Long Range (>20,000bp): 3,618,043 (12.92% / 19.61%)