Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 4 threads; openjdk version "17.0.7" 2023-04-18; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -d /storage3/nyt/Projects/Juicer-Out/2023-05-18_BGI/poolB/MoPh7 -s DpnII -y /storage/nyt/Data/Genomes/MoPh/cat_hg19_canonical_AsteI2_V4_pURC-Puro_mosX_DpnII.txt -p /storage/nyt/Data/Genomes/MoPh/cat_hg19_canonical_AsteI2_V4_pURC-Puro_mosX.chrom.sizes -z /storage/nyt/Data/Genomes/MoPh/cat_hg19_canonical_AsteI2_V4_pURC-Puro_mosX.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 4                                                                                                                                                                                                                                                                                                                                                                                                                                                           
Sequenced Read Pairs:  13,176,081
 Normal Paired: 5,765,907 (43.76%)
 Chimeric Paired: 2,795,587 (21.22%)
 Chimeric Ambiguous: 1,695,847 (12.87%)
 Unmapped: 2,918,740 (22.15%)
 Ligation Motif Present: 11,184,282 (84.88%)
Alignable (Normal+Chimeric Paired): 8,561,494 (64.98%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-06-20T14:21:05,706]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 4,199,866 (31.87%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 4,361,628 (33.10%)
Library Complexity Estimate: 0
Intra-fragment Reads: 124,074 (0.94% / 2.95%)
Below MAPQ Threshold: 1,366,219 (10.37% / 32.53%)
Hi-C Contacts: 2,709,573 (20.56% / 64.52%)
 Ligation Motif Present: 2,303,288  (17.48% / 54.84%)
 3' Bias (Long Range): 68% - 32%
 Pair Type intra chrom %(L-I-O-R): 11% - 67% - 11% - 11%
 Pair Type inter chrom %(L-I-O-R): 26% - 25% - 25% - 24%
 DE: 29%
 Cis/all (FF and RR orient): 32.7%
Inter-chromosomal: 1,298,308  (9.85% / 30.91%)
Intra-chromosomal: 1,411,265  (10.71% / 33.60%)
Short Range (<20,000bp): 966,644  (7.34% / 23.02%)
Long Range (>20,000bp): 444,621  (3.37% / 10.59%)