Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 17 threads; openjdk version "11.0.24" 2024-07-16; /home/ddpanchenko/juicer/scripts/juicer.sh -g T2T_Astel_plm -s none -z /home/ddpanchenko/hubrid_anopheles_human/data/genome/T2Thuman_AsteI2_plm_merged_ref.fa -D /home/ddpanchenko/juicer/ -t 17                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
Sequenced Read Pairs:  3,125,700
 Normal Paired: 1,946,289 (62.27%)
 Chimeric Paired: 695,176 (22.24%)
 Chimeric Ambiguous: 216,789 (6.94%)
 Unmapped: 267,446 (8.56%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 2,641,465 (84.51%)
Unique Reads: 1,895,261 (60.63%)
PCR Duplicates: 712,917 (22.81%)
Optical Duplicates: 33,287 (1.06%)
Library Complexity Estimate: 3,854,861
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 456,998 (14.62% / 24.11%)
Hi-C Contacts: 1,438,263 (46.01% / 75.89%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 5% - 5% - 5% - 5%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 0%
 Cis/all (FF and RR orient): 61.9%
Inter-chromosomal: 166,256  (5.32% / 8.77%)
Intra-chromosomal: 1,272,007  (40.70% / 67.12%)
Short Range (<20,000bp): 1,080,831  (34.58% / 57.03%)
Long Range (>20,000bp): 191,176  (6.12% / 10.09%)