Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 17 threads; openjdk version "11.0.24" 2024-07-16; /home/ddpanchenko/juicer/scripts/juicer.sh -g T2T_Astel_plm -s none -z /home/ddpanchenko/hubrid_anopheles_human/data/genome/T2Thuman_AsteI2_plm_merged_ref.fa -D /home/ddpanchenko/juicer/ -t 17 Sequenced Read Pairs: 3,125,700 Normal Paired: 1,946,289 (62.27%) Chimeric Paired: 695,176 (22.24%) Chimeric Ambiguous: 216,789 (6.94%) Unmapped: 267,446 (8.56%) Ligation Motif Present: 0 (0.00%) Alignable (Normal+Chimeric Paired): 2,641,465 (84.51%) Unique Reads: 1,895,261 (60.63%) PCR Duplicates: 712,917 (22.81%) Optical Duplicates: 33,287 (1.06%) Library Complexity Estimate: 3,854,861 Intra-fragment Reads: 0 (0.00% / 0.00%) Below MAPQ Threshold: 456,998 (14.62% / 24.11%) Hi-C Contacts: 1,438,263 (46.01% / 75.89%) Ligation Motif Present: 0 (0.00% / 0.00%) 3' Bias (Long Range): 0% - 0% Pair Type intra chrom %(L-I-O-R): 5% - 5% - 5% - 5% Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25% DE: 0% Cis/all (FF and RR orient): 61.9% Inter-chromosomal: 166,256 (5.32% / 8.77%) Intra-chromosomal: 1,272,007 (40.70% / 67.12%) Short Range (<20,000bp): 1,080,831 (34.58% / 57.03%) Long Range (>20,000bp): 191,176 (6.12% / 10.09%)