Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 17 threads; openjdk version "11.0.24" 2024-07-16; /home/ddpanchenko/juicer/scripts/juicer.sh -g T2T_Astel_plm -s none -z /home/ddpanchenko/hubrid_anopheles_human/data/genome/T2Thuman_AsteI2_plm_merged_ref.fa -D /home/ddpanchenko/juicer/ -t 17                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
Sequenced Read Pairs:  2,032,592
 Normal Paired: 1,170,971 (57.61%)
 Chimeric Paired: 553,382 (27.23%)
 Chimeric Ambiguous: 175,361 (8.63%)
 Unmapped: 132,878 (6.54%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 1,724,353 (84.84%)
Unique Reads: 1,365,749 (67.19%)
PCR Duplicates: 337,577 (16.61%)
Optical Duplicates: 21,027 (1.03%)
Library Complexity Estimate: 3,708,451
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 376,571 (18.53% / 27.57%)
Hi-C Contacts: 989,178 (48.67% / 72.43%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 6% - 82% - 6% - 6%
 Pair Type inter chrom %(L-I-O-R): 26% - 25% - 25% - 24%
 DE: 65%
 Cis/all (FF and RR orient): 58.5%
Inter-chromosomal: 142,861  (7.03% / 10.46%)
Intra-chromosomal: 846,317  (41.64% / 61.97%)
Short Range (<20,000bp): 702,922  (34.58% / 51.47%)
Long Range (>20,000bp): 143,395  (7.05% / 10.50%)