Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 17 threads; openjdk version "11.0.24" 2024-07-16; /home/ddpanchenko/juicer/scripts/juicer.sh -g T2T_Astel_plm -s none -z /home/ddpanchenko/hubrid_anopheles_human/data/genome/T2Thuman_AsteI2_plm_merged_ref.fa -D /home/ddpanchenko/juicer/ -t 17                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
Sequenced Read Pairs:  1,410,947
 Normal Paired: 774,210 (54.87%)
 Chimeric Paired: 409,233 (29.00%)
 Chimeric Ambiguous: 134,099 (9.50%)
 Unmapped: 93,405 (6.62%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 1,183,443 (83.88%)
Unique Reads: 1,035,242 (73.37%)
PCR Duplicates: 130,773 (9.27%)
Optical Duplicates: 17,428 (1.24%)
Library Complexity Estimate: 4,801,879
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 194,857 (13.81% / 18.82%)
Hi-C Contacts: 840,385 (59.56% / 81.18%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 7% - 79% - 7% - 7%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 62%
 Cis/all (FF and RR orient): 61.9%
Inter-chromosomal: 123,106  (8.73% / 11.89%)
Intra-chromosomal: 717,279  (50.84% / 69.29%)
Short Range (<20,000bp): 578,522  (41.00% / 55.88%)
Long Range (>20,000bp): 138,757  (9.83% / 13.40%)