Experiment description: MoPh15_AsteI2_V4_second
Sequenced Read Pairs:  27,328,749
 Normal Paired: 12,339,195 (45.15%)
 Chimeric Paired: 2,592,284 (9.49%)
 Chimeric Ambiguous: 2,642,593 (9.67%)
 Unmapped: 9,754,677 (35.69%)
 Ligation Motif Present: 16,440,418 (60.16%)
Alignable (Normal+Chimeric Paired): 14,931,479 (54.64%)
Unique Reads: 3,360,903 (12.30%)
PCR Duplicates: 5,570,357 (20.38%)
Optical Duplicates: 6,000,219 (21.96%)
Library Complexity Estimate: 3,688,411
Intra-fragment Reads: 132,308 (0.48% / 3.94%)
Below MAPQ Threshold: 1,677,754 (6.14% / 49.92%)
Hi-C Contacts: 1,550,841 (5.67% / 46.14%)
 Ligation Motif Present: 979,925  (3.59% / 29.16%)
 3' Bias (Long Range): 57% - 43%
 Pair Type intra chrom %(L-I-O-R): 12% - 65% - 11% - 11%
 Pair Type inter chrom %(L-I-O-R): 27% - 26% - 24% - 23%
 DE: 31%
 Cis/all (FF and RR orient): 38.8%
Inter-chromosomal: 656,818  (2.40% / 19.54%)
Intra-chromosomal: 894,023  (3.27% / 26.60%)
Short Range (<20,000bp): 581,652  (2.13% / 17.31%)
Long Range (>20,000bp): 312,371  (1.14% / 9.29%)