Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 17 threads; openjdk version "11.0.24" 2024-07-16; /home/ddpanchenko/juicer/scripts/juicer.sh -g T2T_Astel_plm -p /home/ddpanchenko/hubrid_anopheles_human/data/genome/chrom.sizes -s none -z /home/ddpanchenko/hubrid_anopheles_human/data/genome/T2Thuman_AsteI2_plm_merged_ref.fa -D /home/ddpanchenko/juicer/ -t 17                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  34,505,326
 Normal Paired: 16,626,550 (48.19%)
 Chimeric Paired: 8,870,945 (25.71%)
 Chimeric Ambiguous: 4,723,372 (13.69%)
 Unmapped: 4,284,459 (12.42%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 25,497,495 (73.89%)
Unique Reads: 17,908,811 (51.90%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 7,588,684 (21.99%)
Library Complexity Estimate: 0
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 3,190,138 (9.25% / 17.81%)
Hi-C Contacts: 14,718,673 (42.66% / 82.19%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 11% - 66% - 11% - 11%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 38%
 Cis/all (FF and RR orient): 51.8%
Inter-chromosomal: 4,387,104  (12.71% / 24.50%)
Intra-chromosomal: 10,331,569  (29.94% / 57.69%)
Short Range (<20,000bp): 6,931,496  (20.09% / 38.70%)
Long Range (>20,000bp): 3,400,073  (9.85% / 18.99%)