Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 17 threads; openjdk version "11.0.24" 2024-07-16; /home/ddpanchenko/juicer/scripts/juicer.sh -g T2T_Astel_plm -p /home/ddpanchenko/hubrid_anopheles_human/data/genome/chrom.sizes -s none -z /home/ddpanchenko/hubrid_anopheles_human/data/genome/T2Thuman_AsteI2_plm_merged_ref.fa -D /home/ddpanchenko/juicer/ -t 17                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  32,094,214
 Normal Paired: 17,819,466 (55.52%)
 Chimeric Paired: 9,304,201 (28.99%)
 Chimeric Ambiguous: 4,391,214 (13.68%)
 Unmapped: 579,333 (1.81%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 27,123,667 (84.51%)
Unique Reads: 21,542,317 (67.12%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 5,581,350 (17.39%)
Library Complexity Estimate: 0
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 3,091,726 (9.63% / 14.35%)
Hi-C Contacts: 18,450,591 (57.49% / 85.65%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 12% - 65% - 12% - 12%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 41%
 Cis/all (FF and RR orient): 60.9%
Inter-chromosomal: 4,276,835  (13.33% / 19.85%)
Intra-chromosomal: 14,173,756  (44.16% / 65.79%)
Short Range (<20,000bp): 9,595,028  (29.90% / 44.54%)
Long Range (>20,000bp): 4,578,728  (14.27% / 21.25%)