Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 17 threads; openjdk version "11.0.24" 2024-07-16; /home/ddpanchenko/juicer/scripts/juicer.sh -g T2T_Astel_plm -p /home/ddpanchenko/hubrid_anopheles_human/data/genome/chrom.sizes -s none -z /home/ddpanchenko/hubrid_anopheles_human/data/genome/T2Thuman_AsteI2_plm_merged_ref.fa -D /home/ddpanchenko/juicer/ -t 17                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  32,094,214
 Normal Paired: 17,819,466 (55.52%)
 Chimeric Paired: 9,304,201 (28.99%)
 Chimeric Ambiguous: 4,391,214 (13.68%)
 Unmapped: 579,333 (1.81%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 27,123,667 (84.51%)
Unique Reads: 21,542,317 (67.12%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 5,581,350 (17.39%)
Library Complexity Estimate: 0
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 4,734,751 (14.75% / 21.98%)
Hi-C Contacts: 16,807,566 (52.37% / 78.02%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 12% - 66% - 11% - 12%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 42%
 Cis/all (FF and RR orient): 62.0%
Inter-chromosomal: 3,703,501  (11.54% / 17.19%)
Intra-chromosomal: 13,104,065  (40.83% / 60.83%)
Short Range (<20,000bp): 8,969,255  (27.95% / 41.64%)
Long Range (>20,000bp): 4,134,810  (12.88% / 19.19%)