Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 17 threads; openjdk version "11.0.24" 2024-07-16; /home/ddpanchenko/juicer/scripts/juicer.sh -g T2T_Astel_plm -p /home/ddpanchenko/hubrid_anopheles_human/data/genome/chrom.sizes -s none -z /home/ddpanchenko/hubrid_anopheles_human/data/genome/T2Thuman_AsteI2_plm_merged_ref.fa -D /home/ddpanchenko/juicer/ -t 17                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  38,858,553
 Normal Paired: 20,341,557 (52.35%)
 Chimeric Paired: 10,601,934 (27.28%)
 Chimeric Ambiguous: 5,740,032 (14.77%)
 Unmapped: 2,175,030 (5.60%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 30,943,491 (79.63%)
Unique Reads: 23,414,252 (60.26%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 7,529,239 (19.38%)
Library Complexity Estimate: 0
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 3,801,597 (9.78% / 16.24%)
Hi-C Contacts: 19,612,655 (50.47% / 83.76%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 12% - 65% - 12% - 12%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 38%
 Cis/all (FF and RR orient): 55.4%
Inter-chromosomal: 5,402,863  (13.90% / 23.08%)
Intra-chromosomal: 14,209,792  (36.57% / 60.69%)
Short Range (<20,000bp): 9,441,461  (24.30% / 40.32%)
Long Range (>20,000bp): 4,768,331  (12.27% / 20.37%)