Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 17 threads; openjdk version "11.0.24" 2024-07-16; /home/ddpanchenko/juicer/scripts/juicer.sh -g T2T_Astel_plm -p /home/ddpanchenko/hubrid_anopheles_human/data/genome/chrom.sizes -s none -z /home/ddpanchenko/hubrid_anopheles_human/data/genome/T2Thuman_AsteI2_plm_merged_ref.fa -D /home/ddpanchenko/juicer/ -t 17 Sequenced Read Pairs: 28,003,802 Normal Paired: 12,666,343 (45.23%) Chimeric Paired: 9,257,293 (33.06%) Chimeric Ambiguous: 4,756,342 (16.98%) Unmapped: 1,323,824 (4.73%) Ligation Motif Present: 0 (0.00%) Alignable (Normal+Chimeric Paired): 21,923,636 (78.29%) Unique Reads: 18,634,794 (66.54%) PCR Duplicates: 0 (0.00%) Optical Duplicates: 3,288,842 (11.74%) Library Complexity Estimate: 0 Intra-fragment Reads: 0 (0.00% / 0.00%) Below MAPQ Threshold: 3,278,494 (11.71% / 17.59%) Hi-C Contacts: 15,356,300 (54.84% / 82.41%) Ligation Motif Present: 0 (0.00% / 0.00%) 3' Bias (Long Range): 0% - 0% Pair Type intra chrom %(L-I-O-R): 12% - 64% - 12% - 12% Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25% DE: 42% Cis/all (FF and RR orient): 65.2% Inter-chromosomal: 3,118,363 (11.14% / 16.73%) Intra-chromosomal: 12,237,937 (43.70% / 65.67%) Short Range (<20,000bp): 8,157,276 (29.13% / 43.77%) Long Range (>20,000bp): 4,080,661 (14.57% / 21.90%)