Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 17 threads; openjdk version "11.0.24" 2024-07-16; /home/ddpanchenko/juicer/scripts/juicer.sh -g T2T_Astel_plm -p /home/ddpanchenko/hubrid_anopheles_human/data/genome/chrom.sizes -s none -z /home/ddpanchenko/hubrid_anopheles_human/data/genome/T2Thuman_AsteI2_plm_merged_ref.fa -D /home/ddpanchenko/juicer/ -t 17                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  28,003,802
 Normal Paired: 12,666,343 (45.23%)
 Chimeric Paired: 9,257,293 (33.06%)
 Chimeric Ambiguous: 4,756,342 (16.98%)
 Unmapped: 1,323,824 (4.73%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 21,923,636 (78.29%)
Unique Reads: 18,634,794 (66.54%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 3,288,842 (11.74%)
Library Complexity Estimate: 0
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 4,942,031 (17.65% / 26.52%)
Hi-C Contacts: 13,692,763 (48.90% / 73.48%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 12% - 65% - 12% - 12%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 43%
 Cis/all (FF and RR orient): 67.0%
Inter-chromosomal: 2,564,985  (9.16% / 13.76%)
Intra-chromosomal: 11,127,778  (39.74% / 59.72%)
Short Range (<20,000bp): 7,503,880  (26.80% / 40.27%)
Long Range (>20,000bp): 3,623,898  (12.94% / 19.45%)