Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 17 threads; openjdk version "11.0.25" 2024-10-15; /home/ddpanchenko/juicer/scripts/juicer.sh -g T2T_Astel_plm -p /home/ddpanchenko/hybrid_anopheles_human/data/genome/chrom.sizes -s none -z /home/ddpanchenko/hybrid_anopheles_human/data/genome/T2Thuman_AsteI2_plm_merged_ref.fa -D /home/ddpanchenko/juicer/ -t 17 Sequenced Read Pairs: 1,039,213 Normal Paired: 565,542 (54.42%) Chimeric Paired: 363,289 (34.96%) Chimeric Ambiguous: 89,422 (8.60%) Unmapped: 20,960 (2.02%) Ligation Motif Present: 0 (0.00%) Alignable (Normal+Chimeric Paired): 928,831 (89.38%) Unique Reads: 901,482 (86.75%) PCR Duplicates: 0 (0.00%) Optical Duplicates: 27,349 (2.63%) Library Complexity Estimate: 0 Intra-fragment Reads: 0 (0.00% / 0.00%) Below MAPQ Threshold: 95,816 (9.22% / 10.63%) Hi-C Contacts: 805,666 (77.53% / 89.37%) Ligation Motif Present: 0 (0.00% / 0.00%) 3' Bias (Long Range): 0% - 0% Pair Type intra chrom %(L-I-O-R): 8% - 78% - 7% - 8% Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25% DE: 61% Cis/all (FF and RR orient): 65.9% Inter-chromosomal: 108,216 (10.41% / 12.00%) Intra-chromosomal: 697,450 (67.11% / 77.37%) Short Range (<20,000bp): 545,567 (52.50% / 60.52%) Long Range (>20,000bp): 151,883 (14.62% / 16.85%)