Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 17 threads; openjdk version "11.0.25" 2024-10-15; /home/ddpanchenko/juicer/scripts/juicer.sh -g T2T_Astel_plm -p /home/ddpanchenko/hybrid_anopheles_human/data/genome/chrom.sizes -s none -z /home/ddpanchenko/hybrid_anopheles_human/data/genome/T2Thuman_AsteI2_plm_merged_ref.fa -D /home/ddpanchenko/juicer/ -t 17                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  1,039,213
 Normal Paired: 565,542 (54.42%)
 Chimeric Paired: 363,289 (34.96%)
 Chimeric Ambiguous: 89,422 (8.60%)
 Unmapped: 20,960 (2.02%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 928,831 (89.38%)
Unique Reads: 901,482 (86.75%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 27,349 (2.63%)
Library Complexity Estimate: 0
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 95,816 (9.22% / 10.63%)
Hi-C Contacts: 805,666 (77.53% / 89.37%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 8% - 78% - 7% - 8%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 61%
 Cis/all (FF and RR orient): 65.9%
Inter-chromosomal: 108,216  (10.41% / 12.00%)
Intra-chromosomal: 697,450  (67.11% / 77.37%)
Short Range (<20,000bp): 545,567  (52.50% / 60.52%)
Long Range (>20,000bp): 151,883  (14.62% / 16.85%)